Basic Information
Locus ID:
nbisL1-mrna-4147
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 5911277 | 5923232 | - | nbisL1-mrna-4147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 130,920.63 Da | 42.94 | 77.74 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 194 | 522 | 2.44051E-169 | - |
| CDD | cd00121 | MATH | 52 | 176 | 2.36896E-39 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 517 | 3.1E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 882 | 1093 | 2.2E-58 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 621 | 872 | 3.7E-77 | IPR024729 |
| Pfam | PF00917 | MATH domain | 58 | 176 | 1.1E-20 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 185 | 3.11E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 548 | 5.89E-98 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 521 | 4.5E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 798 | 895 | 3.3E-28 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 681 | 797 | 2.1E-44 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 50 | 192 | 1.4E-51 | IPR008974 |
| SMART | SM00061 | math_3 | 53 | 157 | 1.4E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 520 | 40.260628 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 38.775414 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 436 | 453 | - | IPR018200 |
| Coils | Coil | Coil | 533 | 556 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_012090875.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Jatropha curcas] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MFL2 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology