Basic Information
Locus ID:
nbisL1-mrna-414
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Myb/SANT-like DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 2609887 | 2611302 | + | nbisL1-mrna-414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 54,502.39 Da | 50.26 | 50.72 | -1.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13837 | Myb/SANT-like DNA-binding domain | 90 | 216 | 3.0E-22 | IPR044822 |
| Gene3D | G3DSA:1.10.10.60 | - | 93 | 167 | 7.9E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 343 | - | - |
| Coils | Coil | Coil | 373 | 400 | - | - |
| Coils | Coil | Coil | 408 | 437 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10040.1 | sequence-specific DNA binding transcription factors. | 0 |
| RefSeq | XP_021686057.1 | uncharacterized protein LOC110668938 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A6A6KLH4 | Myb_DNA-bind_4 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_038683 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology