Basic Information
Locus ID:
nbisL1-mrna-4132
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 15089438 | 15096363 | - | nbisL1-mrna-4132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 44,370.21 Da | 50.02 | 100.95 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 9.75404E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 75 | 1.1E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 371 | 1.59E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 80 | 1.14E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 4.7E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 92 | 385 | 1.5E-9 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 7.4E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 40.68314 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_002323382.1 | E3 ubiquitin-protein ligase PUB22 [Populus trichocarpa] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | B9IIK9 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_016G069400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology