Basic Information
Locus ID:
nbisL1-mrna-4126
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 5774673 | 5784051 | + | nbisL1-mrna-4126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 88,998.56 Da | 38.32 | 82.30 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 278 | 486 | 1.6E-41 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 276 | 754 | 3.14E-56 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 266 | 509 | 3.5E-62 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 278 | 788 | 25.340096 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 279 | 294 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 45 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_048236014.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Ricinus communis] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2M494 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology