Basic Information
Locus ID:
nbisL1-mrna-4114
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 14908712 | 14917223 | - | nbisL1-mrna-4114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 92,868.60 Da | 39.44 | 82.23 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 296 | 718 | 6.2E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 293 | 754 | 6.48E-59 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 290 | 528 | 3.6E-68 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 295 | 702 | 27.128271 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 296 | 311 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 830 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_048236014.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Ricinus communis] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2M494 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology