Basic Information
Locus ID:
nbisL1-mrna-4099
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 14784954 | 14787684 | - | nbisL1-mrna-4099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 49,757.35 Da | 42.26 | 75.55 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 165 | 223 | 2.4E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 382 | 417 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 332 | 0.094 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 247 | 282 | 8.6E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 418 | 1.65E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 420 | 2.3E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 201 | 237 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 332 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 378 | 417 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 282 | 6.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 198 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 154 | 95.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 375 | 120.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 385 | 418 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 166 | 207 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 166 | 198 | 9.230148 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 250 | 282 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 282 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 385 | 418 | 10.337415 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 404 | 418 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_006429995.1 | cell division cycle 20.2, cofactor of APC complex [Citrus clementina] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | V4SW50 | ANAPC4_WD40 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10011710mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology