Basic Information
Locus ID:
nbisL1-mrna-4095
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase BAH1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 14746665 | 14749965 | + | nbisL1-mrna-4095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 41,379.62 Da | 45.26 | 76.25 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14482 | SPX_BAH1-like | 23 | 182 | 4.6209E-91 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 252 | 303 | 1.1E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 306 | 6.19E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 353 | 2.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 253 | 301 | 3.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 253 | 302 | 11.972923 | IPR001841 |
| ProSiteProfiles | PS51382 | SPX domain profile. | 22 | 186 | 15.194169 | IPR004331 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 268 | 277 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38920.1 | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related. | 0 |
| RefSeq | XP_012090881.1 | probable E3 ubiquitin-protein ligase BAH1-like [Jatropha curcas] | 0 |
| Q8GW10 | Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis thaliana OX=3702 GN=RF178 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067JDL6 | RING-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_03070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31867 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30277220 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.438.V1.1, AsparagusV1_07.3386.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28037 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G38920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016996m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21300.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1761 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1752 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1784 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1297, BH01.1347, CH01.1390 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0223630, gene-QOZ80_3BG0268400 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0193580.1, HORVU.MOREX.r3.4HG0358590.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063293 |
| Poaceae | Oryza coarctata | 1 | Oco05G019190 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g44810.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G140700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104568 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G009080, Chr07G023970, Chr12G028020 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G591100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG054190, gene_TRIDC5BG058180 |
| Poaceae | Triticum aestivum | 2 | TraesCS5B02G373000.1, TraesCS5D02G380200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb052950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20522 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3160, Zma_g838 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4095 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14692 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.590 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004904, Maker00005833 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5233 |
| Salicaceae | Populus euphratica | 2 | populus_peu12367, populus_peu26012 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643858 |
| Solanaceae | Solanum chilense | 1 | SOLCI003449100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003489 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06290.v3.1 |