Basic Information
Locus ID:
nbisL1-mrna-4081
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 57440811 | 57471617 | - | nbisL1-mrna-4081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 135,866.80 Da | 45.00 | 79.77 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 50 | 174 | 5.63381E-38 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 192 | 520 | 3.51627E-166 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 619 | 738 | 2.5E-30 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 857 | 1089 | 3.2E-53 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 194 | 515 | 1.6E-45 | IPR001394 |
| Pfam | PF00917 | MATH domain | 56 | 175 | 1.3E-17 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 47 | 180 | 6.87E-42 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 189 | 547 | 8.44E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 679 | 739 | 7.7E-19 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 48 | 189 | 2.6E-53 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 773 | 870 | 4.9E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 190 | 519 | 1.9E-88 | - |
| SMART | SM00061 | math_3 | 51 | 155 | 9.4E-19 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 49 | 174 | 37.957191 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 194 | 518 | 40.303543 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 434 | 451 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 195 | 210 | - | IPR018200 |
| Coils | Coil | Coil | 534 | 561 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_040959371.1 | ubiquitin C-terminal hydrolase 13 isoform X2 [Gossypium hirsutum] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2RRE5 | ubiquitinyl hydrolase 1 OS=Gossypium raimondii OX=29730 GN=B456_011G226800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology