Basic Information
Locus ID:
nbisL1-mrna-4070
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001562F_pilon | 2802663 | 2806318 | + | nbisL1-mrna-4070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 51,694.66 Da | 46.43 | 58.35 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 316 | 400 | 8.9E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 417 | 448 | 2.1E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 316 | 401 | 9.3E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 207 | - | - |
| Coils | Coil | Coil | 315 | 342 | - | - |
| Coils | Coil | Coil | 354 | 381 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_002519215.1 | uncharacterized protein LOC8258805 [Ricinus communis] | 0 |
| TrEMBL | A0A2P2KQ66 | Protein binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology