Basic Information
Locus ID:
nbisL1-mrna-4070
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ER-associated misfolded protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 14556328 | 14558096 | - | nbisL1-mrna-4070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 45,009.54 Da | 51.00 | 59.28 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 105 | 277 | 2.3E-65 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 201 | 275 | 2.6E-28 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 93 | 200 | 1.7E-36 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 403 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021669194.1 | ubiquitin fusion degradation protein 1 homolog [Hevea brasiliensis] | 0 |
| Q92890 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens OX=9606 GN=UFD1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6A6KKQ9 | Ubiquitin fusion degradation protein 1 homolog OS=Hevea brasiliensis OX=3981 GN=GH714_036768 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology