Basic Information
Locus ID:
nbisL1-mrna-4065
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 5382221 | 5383231 | - | nbisL1-mrna-4065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 37,924.13 Da | 45.46 | 84.17 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 193 | 0.068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 326 | 1.07E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 334 | 8.8E-42 | IPR015943 |
| SMART | SM00320 | WD40_4 | 244 | 284 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 193 | 9.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 240 | 6.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 152 | 0.28 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 284 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 202 | 9.171722 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021289421.1 | WD repeat-containing protein LWD1-like [Herrania umbratica] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1ARC8 | WD repeat-containing protein LWD1-like OS=Herrania umbratica OX=108875 GN=LOC110420434 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology