Basic Information
Locus ID:
nbisL1-mrna-4043
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 57045932 | 57049005 | + | nbisL1-mrna-4043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 62,937.50 Da | 39.14 | 99.00 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 198 | 240 | 7.65034E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 405 | 442 | 3.6E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 321 | 360 | 1.0E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 194 | 265 | 9.8E-22 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 269 | 1.79E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 292 | 564 | 1.04E-46 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 404 | 569 | 4.1E-28 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 282 | 401 | 2.0E-25 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 2 | 88 | 7.1E-8 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 267 | 7.0E-31 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 197 | 260 | 1.4E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 444 | 484 | 9.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 485 | 525 | 27.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 362 | 402 | 1.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 321 | 361 | 3.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 403 | 443 | 0.072 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 455 | 492 | 8.837399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 193 | 267 | 44.822929 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 414 | 456 | 8.6974 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 332 | 374 | 13.3524 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_039067502.1 | U-box domain-containing protein 14-like [Hibiscus syriacus] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3BSQ0 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110020pilonHSYRG00329 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology