Basic Information
Locus ID:
nbisL1-mrna-4015
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001562F_pilon | 2494743 | 2499036 | - | nbisL1-mrna-4015 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 56,475.29 Da | 49.44 | 70.08 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd20251 | Complex1_LYR_SF | 444 | 498 | 1.59325E-18 | - |
| Pfam | PF12708 | Pectate lyase superfamily protein | 62 | 111 | 2.0E-6 | IPR024535 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 155 | 421 | 4.4E-76 | IPR000743 |
| Pfam | PF05347 | Complex 1 protein (LYR family) | 444 | 492 | 6.9E-8 | IPR008011 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 60 | 446 | 9.88E-117 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 53 | 497 | 2.9E-113 | IPR012334 |
| SMART | SM00710 | pbh1 | 344 | 365 | 2000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 216 | 265 | 570.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 285 | 305 | 4400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 315 | 336 | 31.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 292 | 305 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_002519290.1 | polygalacturonase At1g48100 [Ricinus communis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J5VUR4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology