Basic Information
Locus ID:
nbisL1-mrna-4005
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 4170269 | 4174331 | + | nbisL1-mrna-4005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 85,213.71 Da | 43.28 | 96.61 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 3 | 159 | 2.81849E-40 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 693 | 733 | 7.70792E-18 | - |
| Pfam | PF00582 | Universal stress protein family | 18 | 150 | 3.0E-6 | IPR006016 |
| Pfam | PF04564 | U-box domain | 689 | 755 | 2.3E-15 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 410 | 662 | 4.1E-39 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 389 | 662 | 1.32E-64 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 149 | 3.35E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 685 | 760 | 8.56E-23 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 4 | 159 | 2.6E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 689 | 761 | 1.7E-26 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 385 | 478 | 4.8E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 479 | 688 | 9.3E-44 | - |
| SMART | SM00220 | serkin_6 | 406 | 669 | 1.3E-26 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 692 | 754 | 5.8E-22 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 406 | 669 | 34.350578 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 688 | 761 | 26.494638 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 524 | 536 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 412 | 433 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57035.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_015571799.1 | U-box domain-containing protein 34 isoform X1 [Ricinus communis] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2MWT4 | U-box domain-containing protein 34 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31732, jg32904 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_9351, gene_9352 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015199 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24603, Sbi_jg8462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20128 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014730 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42895, Sgl47687 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010444, gene:ENSEOMG00000044953 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0016300 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30259650 |
| Apiaceae | Apium graveolens | 2 | Ag2G02468, Ag5G01558 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G000920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709628 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2297.V1.1, AsparagusV1_06.1459.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G01336 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G19410.1, AT5G57035.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012732m.g.v1.0, Thhalv10022572m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g32790.v2.2, Sp3g32800.v2.2, Sp6g18750.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g015510.2N, BniB02g036230.2N, BniB03g068640.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0831 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0857 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g00990, gene.Cymno16g01130 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g18860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1265 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039627 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05154, Lb3G16947 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2096, AH07.857, BH05.964, BH07.992, CH06.2145, CH07.741 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0106310, gene-QOZ80_2BG0159880 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0579590.1, HORVU.MOREX.r3.7HG0716320.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_015963, gene-QYE76_021686, gene-QYE76_034596 ... |
| Poaceae | Oryza coarctata | 3 | Oco04G005890, Oco11G011640, Oco12G011750 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g12670.1, LOC_Os06g37620.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G088500, gene-BS78_10G173700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202007, Pt_Chr0601857 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029340, Chr05G007030, Chr10G016870, Chr11G005540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G365300, Tel7E01G615000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG026870, gene_TRIDC6BG033010 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS6B02G213500.2, TraesCS6D02G172100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb205230_P001, Zm00001eb385250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41148 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32976 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2349, evm.TU.LG07.258, evm.TU.LG15.695 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.540 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12982 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12785 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16926 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.377 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014830 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4005 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8167 |
| Salicaceae | Populus euphratica | 1 | populus_peu11909 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618043 |
| Solanaceae | Solanum chilense | 2 | SOLCI004414200, SOLCI005557000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005811, gene-LOC107025999 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3218 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G2027, TC04G1940, TC10G1798 |
| Zosteraceae | Zostera marina | 2 | Zosma01g03350.v3.1, Zosma05g05940.v3.1 |