Basic Information
Locus ID:
nbisL1-mrna-4
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 107347 | 107745 | - | nbisL1-mrna-4 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 15,636.07 Da | 62.53 | 79.02 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 84 | 128 | 1.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 84 | 131 | 4.08E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 130 | 3.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 85 | 127 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 85 | 128 | 13.064645 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034892890.1 | RING-H2 finger protein ATL18 [Populus alba] | 0 |
| Q9SUS4 | Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J5VPD4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21858 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21780 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009898 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55719, Sgl60933 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036867, gene:ENSEOMG00000050832 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004820, CQ.Regalona.r1.9AG0019800 |
| Asteraceae | Flaveria trinervia | 7 | Ftri18G16887, Ftri18G33262, Ftri1G07426, Ftri1G12042 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g066530.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039059, Pov_00039061, Pov_00039062 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.344 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4 |
| Solanaceae | Solanum chilense | 2 | SOLCI000446100, SOLCI004491000 |