Basic Information
Locus ID:
nbisL1-mrna-3991
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 56463278 | 56464336 | + | nbisL1-mrna-3991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 37,830.76 Da | 55.51 | 68.67 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 193 | 234 | 1.05626E-23 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 261 | 347 | 2.2E-30 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 193 | 234 | 9.3E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 37 | 7.1E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 240 | 2.65E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 240 | 1.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 193 | 233 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 234 | 12.208971 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_039067425.1 | probable E3 ubiquitin-protein ligase RHC2A [Hibiscus syriacus] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3BN24 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110020pilonHSYRG00483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology