Basic Information
Locus ID:
nbisL1-mrna-3966
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3853445 | 3858181 | - | nbisL1-mrna-3966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 44,462.32 Da | 43.73 | 69.37 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 45 | 115 | 6.72257E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 249 | 323 | 4.26119E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 129 | 203 | 4.10273E-49 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 251 | 317 | 5.5E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 130 | 200 | 2.2E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 45 | 111 | 8.8E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 31 | 121 | 1.48E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 121 | 215 | 5.64E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 240 | 324 | 3.12E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 225 | 326 | 5.7E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 123 | 221 | 1.6E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 35 | 122 | 9.5E-19 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 129 | 202 | 4.8E-5 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 250 | 319 | 8.3E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 44 | 113 | 1.9E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 129 | 202 | 8.2E-24 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 44 | 113 | 22.0 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 128 | 206 | 17.847509 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 249 | 323 | 14.555817 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 43 | 117 | 14.385262 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 246 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_030530541.1 | oligouridylate-binding protein 1-like [Rhodamnia argentea] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M1J5 | Uncharacterized protein MANES_16G093200 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology