Basic Information
Locus ID:
nbisL1-mrna-3964
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 4744805 | 4752819 | + | nbisL1-mrna-3964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 104,928.12 Da | 44.29 | 81.29 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 581 | 621 | 2.99375E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 242 | 297 | 4.3E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 515 | 565 | 1.2E-15 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 569 | 623 | 6.38E-15 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 818 | 909 | 2.68E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 664 | 727 | 3.54E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 666 | 728 | 7.9E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 568 | 663 | 2.3E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 581 | 622 | 8.4E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 669 | 726 | 0.0025 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 579 | 624 | 10.2465 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 582 | 621 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 424 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_012082509.1 | uncharacterized protein LOC105642316 [Jatropha curcas] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MRG7 | PHD-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology