Basic Information
Locus ID:
nbisL1-mrna-395
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 2497700 | 2505495 | + | nbisL1-mrna-395 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 102,613.56 Da | 46.24 | 80.22 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 582 | 622 | 1.04392E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 516 | 566 | 9.3E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 242 | 297 | 4.8E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 665 | 727 | 7.75E-9 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 570 | 624 | 4.94E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 667 | 729 | 7.7E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 569 | 663 | 1.8E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 582 | 623 | 3.7E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 670 | 727 | 0.0025 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 580 | 625 | 10.2376 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 583 | 622 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 434 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_012082509.1 | uncharacterized protein LOC105642316 [Jatropha curcas] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MRG7 | PHD-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology