halophFGD

Basic Information

Locus ID: nbisL1-mrna-3925

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Late embryogenesis abundant protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	12027331	12027987	+	nbisL1-mrna-3925

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.31	23,935.83 Da	35.14	108.58	0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03168	Late embryogenesis abundant protein	96	188	4.6E-13	IPR004864
SUPERFAMILY	SSF117070	LEA14-like	60	154	1.7E-7	-
Gene3D	G3DSA:2.60.40.1820	-	49	198	1.6E-13	-

Best hit

Source	Best Hit ID	Description
TAIR	AT3G54200.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family.
RefSeq	XP_011006239.1	PREDICTED: uncharacterized protein LOC105112288 [Populus euphratica]
TrEMBL	A0A2P2MQY5	LEA_2 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	19	jg13929, jg13930, jg13931, jg14672, jg18929, jg21566, jg2239 ... jg2240, jg2241, jg2242, jg23508, jg23509, jg24574, jg29613, jg33954, jg4762, jg4763, jg7669, jg7670
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1678
Amaranthaceae	Atriplex hortensis	1	Ah031587
Amaranthaceae	Beta vulgaris	1	BVRB_7g156560
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2099, Sbi_jg34414, Sbi_jg34416, Sbi_jg4056 ... Sbi_jg49250
Amaranthaceae	Salicornia europaea	3	Seu_jg2671, Seu_jg2672, Seu_jg5990
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005823
Amaranthaceae	Suaeda glauca	4	Sgl11010, Sgl16418, Sgl71160, Sgl74742
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008140, gene:ENSEOMG00000013625 ... gene:ENSEOMG00000032755, gene:ENSEOMG00000036448, gene:ENSEOMG00000042720, gene:ENSEOMG00000047432
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0003500, CQ.Regalona.r1.7AG0023440 ... CQ.Regalona.r1.7BG0026120
Anacardiaceae	Pistacia vera	5	pistato.v30005070, pistato.v30135270, pistato.v30135280 ... pistato.v30269690, pistato.v30269700
Apiaceae	Apium graveolens	12	Ag10G02564, Ag11G03785, Ag11G03786, Ag11G04061, Ag5G01773 ... Ag5G01774, Ag6G00019, Ag6G00713, Ag6G00714, Ag7G00163, Ag7G01306, Ag9G02773
Arecaceae	Cocos nucifera	7	COCNU_02G003540, COCNU_03G012410, COCNU_03G012420 ... COCNU_03G012430, COCNU_14G002040, contig69091338G000010, contig69108724G000010
Arecaceae	Phoenix dactylifera	7	gene-LOC103701379, gene-LOC103709005, gene-LOC103715222 ... gene-LOC103718550, gene-LOC103718555, gene-LOC103718557, gene-LOC103722246
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1366.V1.1, AsparagusV1_03.998.V1.1 ... AsparagusV1_06.1402.V1.1, AsparagusV1_06.1403.V1.1, AsparagusV1_Unassigned.1095.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G29133, Ftri11G11217, Ftri12G13705, Ftri12G27519 ... Ftri14G17961, Ftri16G23575, Ftri17G14579, Ftri5G26473
Brassicaceae	Arabidopsis thaliana	4	AT1G64065.1, AT2G46150.1, AT3G54200.1, AT4G23610.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001755m.g.v1.0, Thhalv10010532m.g.v1.0 ... Thhalv10023687m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g28210.v2.2, Sp5g08200.v2.2, Sp7g21530.v2.2
Brassicaceae	Brassica nigra	6	BniB01g001030.2N, BniB04g022550.2N, BniB05g013590.2N ... BniB06g000040.2N, BniB06g057450.2N, BniB08g068480.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G0262, Ceq03G0263, Ceq08G0850
Casuarinaceae	Casuarina glauca	2	Cgl03G0308, Cgl03G0309
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g12200, gene.Cymno04g11960, gene.Cymno06g03060
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate09g06640, gene.Thate09g15590, gene.Thate09g15600
Malvaceae	Hibiscus hamabo Siebold & Zucc.	7	nbisL1-mrna-11231, nbisL1-mrna-11767, nbisL1-mrna-1643 ... nbisL1-mrna-5372, nbisL1-mrna-7559, nbisL1-mrna-8360, nbisL1-mrna-8361
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.790, evm.TU.LG10.1468
Plantaginaceae	Plantago ovata	8	Pov_00005281, Pov_00005289, Pov_00005291, Pov_00005292 ... Pov_00007003, Pov_00030323, Pov_00031668, Pov_00039273
Plumbaginaceae	Limonium bicolor	1	Lb2G08285
Poaceae	Echinochloa crus-galli	8	AH02.3092, AH05.1662, AH07.1156, BH02.3170, BH05.1807 ... CH02.3355, CH04.1059, CH07.1013
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0032320, gene-QOZ80_1BG0082540 ... gene-QOZ80_2AG0108540, gene-QOZ80_2BG0162150, gene-QOZ80_5AG0365840, gene-QOZ80_5BG0413650
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0082740.1.CDS1 ... HORVU.MOREX.r3.3HG0287240.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_016050, gene-QYE76_016052
Poaceae	Oryza coarctata	5	Oco01G019730, Oco02G020060, Oco03G007230, Oco09G014770 ... Oco10G014730
Poaceae	Oryza sativa	3	LOC_Os01g53470.1, LOC_Os02g16610.1, LOC_Os05g45070.1
Poaceae	Paspalum vaginatum	4	gene-BS78_03G268400, gene-BS78_04G114100, gene-BS78_K123500 ... gene-BS78_09G209200
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0602557
Poaceae	Sporobolus alterniflorus	8	Chr02G010290, Chr03G015650, Chr05G023110, Chr06G030840 ... Chr08G015730, Chr15G022320, Chr18G014450, Chr22G003120
Poaceae	Thinopyrum elongatum	2	Tel1E01G550100, Tel3E01G460000
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG041400, gene_TRIDC3BG046690
Poaceae	Triticum aestivum	5	TraesCS1A02G347000.1.cds1, TraesCS1B02G361200.1.cds1 ... TraesCS1D02G349900.1.cds1, TraesCS3A02G279000.1.cds1, TraesCS3B02G313300.1.cds1
Poaceae	Zea mays	3	Zm00001eb153970_P001, Zm00001eb203970_P001 ... Zm00001eb353610_P001
Poaceae	Zoysia japonica	2	nbis-gene-12844, nbis-gene-13850
Poaceae	Zoysia macrostachya	3	Zma_g15372, Zma_g27262, Zma_g8600
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.2223, evm.TU.LG06.83, evm.TU.LG26.119
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g27790, gene.Posoc03g22840, gene.Posoc09g08000
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.151, evm.TU.Scaffold_1_RagTag.1057 ... evm.TU.Scaffold_2_RagTag.1280
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-10785, nbisL1-mrna-10802, nbisL1-mrna-18255 ... nbisL1-mrna-18256, nbisL1-mrna-21672, nbisL1-mrna-22373, nbisL1-mrna-3925, nbisL1-mrna-3957, nbisL1-mrna-6545
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-1503, nbisL1-mrna-2865, nbisL1-mrna-2866 ... nbisL1-mrna-3781, nbisL1-mrna-7168
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-18738, nbisL1-mrna-21149, nbisL1-mrna-7360 ... nbisL1-mrna-8579, nbisL1-mrna-8580
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.81, add.evm.TU.utg000007l.161 ... add.evm.TU.utg000007l.162, add.evm.TU.utg000009l.164, add.evm.TU.utg000016l.366
Rhizophoraceae	Kandelia obovata	3	Maker00004830, Maker00016698, Maker00018341
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-17416, nbisL1-mrna-21142, nbisL1-mrna-21742 ... nbisL1-mrna-23208
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10945, nbisL1-mrna-13268, nbisL1-mrna-19599 ... nbisL1-mrna-23211
Salicaceae	Populus euphratica	6	populus_peu03623, populus_peu11551, populus_peu25213 ... populus_peu27633, populus_peu31619, populus_peu34465
Solanaceae	Lycium barbarum	7	gene-LOC132612328, gene-LOC132630851, gene-LOC132634049 ... gene-LOC132637071, gene-LOC132638064, gene-LOC132638065, gene-LOC132645522
Solanaceae	Solanum chilense	3	SOLCI000584000, SOLCI003424100, SOLCI003424200
Solanaceae	Solanum pennellii	4	gene-LOC107027464, gene-LOC107028077, gene-LOC107029507 ... gene-LOC107032512
Tamaricaceae	Reaumuria soongarica	3	STRG.1598_chr01_+, STRG.23395_chr05_-, gene_10518
Tamaricaceae	Tamarix chinensis	2	TC06G0177, TC06G0178
Zosteraceae	Zostera marina	4	Zosma01g28970.v3.1, Zosma02g17240.v3.1, Zosma05g24960.v3.1 ... Zosma06g11200.v3.1