halophFGD

Basic Information

Locus ID: nbisL1-mrna-3918

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	55737431	55737727	+	nbisL1-mrna-3918

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.13	11,349.07 Da	40.32	99.49	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	2	94	4.7E-15	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	2	94	5.12E-24	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	36	97	5.1E-12	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	1	35	9.7E-9	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	98	16.555874	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	79	91	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G24080.1	Protein kinase superfamily protein.
RefSeq	XP_039038851.1	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Hibiscus syriacus]
Swiss-Prot	Q9FLV4	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana OX=3702 GN=At5g24080 PE=2 SV=1
TrEMBL	A0A6A2ZWH5	Kinase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110705pilonHSYRG00039 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Brassica nigra	1	BniB02g004720.2N
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g23980
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3918, nbisL1-mrna-9040
Poaceae	Sporobolus alterniflorus	1	Chr12G004560
Poaceae	Zoysia japonica	1	nbis-gene-56584