Basic Information
Locus ID:
nbisL1-mrna-3912
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001562F_pilon | 1673512 | 1674774 | - | nbisL1-mrna-3912 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 47,010.15 Da | 36.42 | 99.29 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 9 | 50 | 1.92056E-24 | - |
| Pfam | PF04564 | U-box domain | 5 | 77 | 1.9E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 82 | 6.62E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 150 | 379 | 6.14E-20 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 396 | 7.9E-22 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 79 | 4.5E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 8 | 72 | 9.7E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 4 | 79 | 37.569454 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_006372525.2 | U-box domain-containing protein 21 [Populus trichocarpa] | 0 |
| Q9C8D1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1 | 0 | |
| TrEMBL | U5FLQ4 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_017G135000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology