Basic Information
Locus ID:
nbisL1-mrna-3904
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 55600086 | 55608694 | - | nbisL1-mrna-3904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 174,221.13 Da | 35.90 | 107.55 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 318 | 606 | 7.79723E-98 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 632 | 832 | 1.57189E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1307 | 1531 | 2.23787E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 940 | 1284 | 4.35083E-84 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 650 | 784 | 1.9E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1326 | 1478 | 4.2E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 319 | 585 | 6.3E-30 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 971 | 1219 | 1.2E-28 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 944 | 1285 | 2.75E-36 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 625 | 848 | 1.97E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 316 | 616 | 4.84E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1301 | 1545 | 3.45E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 627 | 859 | 9.0E-70 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 907 | 1290 | 1.7E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 292 | 616 | 2.4E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1292 | 1549 | 5.4E-76 | IPR027417 |
| SMART | SM00382 | AAA_5 | 659 | 832 | 2.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1335 | 1524 | 3.4E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 942 | 1201 | 28.876562 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1309 | 1547 | 16.693481 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 322 | 598 | 36.126602 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 632 | 855 | 21.782158 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 757 | 771 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 909 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_039010106.1 | putative ABC transporter C family member 15 [Hibiscus syriacus] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A2ZU79 | ABC-type xenobiotic transporter OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110705pilonHSYRG00052 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology