Basic Information
Locus ID:
nbisL1-mrna-3903
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3301899 | 3305573 | - | nbisL1-mrna-3903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 85,646.29 Da | 43.79 | 83.11 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 15 | 150 | 2.15909E-45 | - |
| Pfam | PF00069 | Protein kinase domain | 431 | 687 | 5.6E-42 | IPR000719 |
| Pfam | PF00582 | Universal stress protein family | 17 | 139 | 4.9E-10 | IPR006016 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 17 | 147 | 3.01E-12 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 410 | 687 | 4.72E-68 | IPR011009 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 11 | 149 | 1.0E-10 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 501 | 717 | 3.9E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 394 | 500 | 1.7E-28 | - |
| SMART | SM00220 | serkin_6 | 428 | 691 | 5.5E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 428 | 691 | 36.286938 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 546 | 558 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 207 | - | - |
| Coils | Coil | Coil | 354 | 405 | - | - |
| Coils | Coil | Coil | 294 | 314 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_015583280.1 | U-box domain-containing protein 52 isoform X1 [Ricinus communis] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K1WWM1 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G061600 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology