Basic Information
Locus ID:
nbisL1-mrna-3900
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3272236 | 3275644 | - | nbisL1-mrna-3900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 53,222.61 Da | 42.64 | 93.26 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 309 | 439 | 1.72879E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 100 | 298 | 3.56285E-136 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 121 | 282 | 2.7E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 322 | 430 | 8.5E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 165 | 450 | 2.68E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 86 | 304 | 2.8E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 305 | 469 | 3.7E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 115 | 312 | 3.3E-57 | IPR014001 |
| SMART | SM00490 | helicmild6 | 349 | 430 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 127 | 297 | 30.081758 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 96 | 124 | 10.552991 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 308 | 469 | 25.845482 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 243 | 251 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_052210185.1 | eukaryotic initiation factor 4A-14 [Diospyros lotus] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6ZAU2 | Putative eukaryotic initiation factor 4A-14 OS=Davidia involucrata OX=16924 GN=Din_010349 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology