halophFGD

Basic Information

Locus ID: nbisL1-mrna-3900

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: F-Box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	11717638	11718828	-	nbisL1-mrna-3900

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.34	45,199.15 Da	36.04	89.42	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03478	Protein of unknown function (DUF295)	296	333	5.1E-5	IPR005174
Pfam	PF12937	F-box-like	15	54	9.8E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	14	92	7.06E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	8	59	3.6E-9	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_010650240.1	-	0
TrEMBL	A0A438C1H4	-	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Arecaceae	Cocos nucifera	1	COCNU_09G005530
Arecaceae	Phoenix dactylifera	2	gene-LOC103697832, gene-LOC120110584
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.542.V1.1
Plantaginaceae	Plantago ovata	2	Pov_00001661, Pov_00025652
Poaceae	Echinochloa crus-galli	16	AH02.3082, AH02.935, AH04.571, AH05.2135, AH06.2064 ... AH07.2957, AH07.2958, AH08.551, BH02.1190, BH05.2269, BH07.2774, BH08.324, CH02.1313, CH05.2348, CH07.2851, CH07.2852
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0140480, gene-QOZ80_2BG0196120 ... gene-QOZ80_5AG0370460, gene-QOZ80_5AG0370470, gene-QOZ80_5BG0418000, gene-QOZ80_8AG0620220, gene-QOZ80_8BG0647890
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0073170.1.CDS1 ... HORVU.MOREX.r3.6HG0603060.1.CDS1, HORVU.MOREX.r3.7HG0657630.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_014340
Poaceae	Oryza coarctata	6	Oco03G017820, Oco03G017830, Oco04G018610, Oco15G003770 ... Oco16G003680, Oco20G001190
Poaceae	Oryza sativa	3	LOC_Os02g44990.1, LOC_Os02g45000.1, LOC_Os08g09360.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G109100, gene-BS78_04G227100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0504721, Pt_Chr0504723
Poaceae	Sporobolus alterniflorus	2	Chr09G023810, Chr20G012540
Poaceae	Thinopyrum elongatum	2	Tel1E01G464900, Tel6E01G474200
Poaceae	Triticum dicoccoides	2	gene_TRIDC6AG039140, gene_TRIDC6BG045940
Poaceae	Triticum aestivum	13	TraesCS1A02G286700.1.cds1, TraesCS1A02G286800.1.cds1 ... TraesCS1B02G296100.1.cds1, TraesCS1B02G296200.1.cds1, TraesCS1D02G285600.1.cds1, TraesCS1D02G285700.1.cds1, TraesCS3D02G518500.1.cds1, TraesCS5B02G258500.1.cds1, TraesCS5D02G267400.1, TraesCS6A02G254200.1.cds1, TraesCS6B02G271400.1.cds1, TraesCS6D02G235600.1.cds1, TraesCS7A02G140700.1.cds1
Poaceae	Zea mays	11	Zm00001eb171270_P001, Zm00001eb187050_P001 ... Zm00001eb250220_P001, Zm00001eb376210_P001, Zm00001eb376240_P001, Zm00001eb376280_P001, Zm00001eb376340_P001, Zm00001eb376360_P001, Zm00001eb376920_P001, Zm00001eb376950_P001, Zm00001eb376960_P001
Poaceae	Zoysia japonica	3	nbis-gene-14155, nbis-gene-38900, nbis-gene-9200
Poaceae	Zoysia macrostachya	1	Zma_g14100
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-3900
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2988