Basic Information
Locus ID:
nbisL1-mrna-3896
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 4287832 | 4292170 | - | nbisL1-mrna-3896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 55,854.29 Da | 51.71 | 87.43 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 272 | 320 | 9.83839E-16 | - |
| Pfam | PF12906 | RING-variant domain | 272 | 319 | 4.0E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 267 | 323 | 2.02E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 328 | 2.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 271 | 320 | 2.2E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 264 | 326 | 19.416304 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048236085.1 | uncharacterized protein LOC8284538 isoform X1 [Ricinus communis] | 0 |
| TrEMBL | A0A2P2M0V3 | Protein binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology