Basic Information
Locus ID:
nbisL1-mrna-3880
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 11508814 | 11528878 | - | nbisL1-mrna-3880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 131,487.13 Da | 46.73 | 78.69 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 202 | 530 | 7.03784E-169 | - |
| CDD | cd00121 | MATH | 61 | 184 | 1.52868E-41 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 629 | 881 | 4.7E-78 | IPR024729 |
| Pfam | PF00917 | MATH domain | 66 | 185 | 5.6E-20 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 204 | 525 | 2.7E-45 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 891 | 1101 | 5.7E-56 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 199 | 557 | 4.12E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 57 | 193 | 9.97E-44 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 200 | 529 | 3.4E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 58 | 199 | 5.1E-54 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 807 | 904 | 1.1E-28 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 689 | 806 | 8.8E-47 | - |
| SMART | SM00061 | math_3 | 61 | 165 | 2.8E-21 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 59 | 184 | 39.082245 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 204 | 528 | 40.232018 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 444 | 461 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 205 | 220 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| Coils | Coil | Coil | 537 | 569 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034909427.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Populus alba] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MFP2 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology