Basic Information
Locus ID:
nbisL1-mrna-3859
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 4070867 | 4072774 | + | nbisL1-mrna-3859 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 71,095.44 Da | 42.80 | 87.39 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 303 | 332 | 5.6E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 508 | 531 | 0.67 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 335 | 364 | 4.0E-6 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 264 | 300 | 3.6E-5 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 434 | 479 | 8.0E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 173 | 199 | 0.0032 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 574 | 601 | 0.0079 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 406 | 432 | 0.75 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 95 | 118 | 0.18 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 201 | 228 | 2.6E-7 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 379 | 477 | 2.0E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 10 | 145 | 1.1E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 150 | 250 | 1.9E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 478 | 611 | 1.3E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 251 | 374 | 9.4E-24 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 435 | 468 | 9.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 303 | 330 | 4.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 273 | 300 | 9.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 201 | 235 | 6.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 335 | 367 | 3.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 173 | 200 | 6.3E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 433 | 467 | 11.301158 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 168 | 198 | 8.659485 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 199 | 234 | 11.925952 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 570 | 604 | 9.152743 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 270 | 304 | 9.63504 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 468 | 503 | 9.284279 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 332 | 366 | 11.147699 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37310.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_002525211.1 | pentatricopeptide repeat-containing protein At2g37310 [Ricinus communis] | 0 |
| Q9ZUT5 | Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E49 PE=2 SV=1 | 0 | |
| TrEMBL | B9SGU2 | Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0820210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32078 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3179 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018961 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15521, Sbi_jg56329 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26790 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006585 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02046, Sgl07200 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003035, gene:ENSEOMG00000031678 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0002350, CQ.Regalona.r1.3BG0002500 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30271600, pistato.v30272050 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G007140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112908 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.337.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G21384 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G37310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016362m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g007490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1252 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1281 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19810 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g29880 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006366 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.4668 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0243790, gene-QOZ80_3BG0284450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0386060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068876 |
| Poaceae | Oryza coarctata | 1 | Oco05G010170 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g17510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G394400 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G031610, Chr04G008280, Chr07G003350, Chr12G008070 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G353600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG014230, gene_TRIDC4BG035850 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G104600.1.cds1, TraesCS4B02G199300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb012970_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-54043, nbis-gene-56787 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3875 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02720 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1613, evm.TU.Scaffold_1_RagTag.1616 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5319, nbisL1-mrna-5416 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4604 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3859 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.240 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017260 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18768, nbisL1-mrna-18770 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-468, nbisL1-mrna-472 |
| Salicaceae | Populus euphratica | 1 | populus_peu12536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630133 |
| Solanaceae | Solanum chilense | 1 | SOLCI002775000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031192 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_490 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0324 |
| Zosteraceae | Zostera marina | 1 | Zosma01g17040.v3.1 |