halophFGD

Basic Information

Locus ID: nbisL1-mrna-3845

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: Myosin heavy chain kinase B-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	2806470	2807711	-	nbisL1-mrna-3845

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.18	37,165.79 Da	49.04	76.50	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	135	171	1.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	184	219	0.067	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	68	285	1.37E-30	IPR036322
Gene3D	G3DSA:2.130.10.10	-	174	320	1.6E-12	IPR015943
Gene3D	G3DSA:2.130.10.10	-	39	173	2.9E-16	IPR015943
SMART	SM00320	WD40_4	227	264	11.0	IPR001680
SMART	SM00320	WD40_4	179	220	0.0021	IPR001680
SMART	SM00320	WD40_4	133	172	3.3E-7	IPR001680
SMART	SM00320	WD40_4	66	130	0.43	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	140	171	9.071966	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	140	171	10.809215	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03362 (F-box and WD-40 domain protein 1/11)

Pathway:

ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04218 (Cellular senescence) map04218 (Cellular senescence) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway) ko04710 (Circadian rhythm)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34380.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_018845438.2	protein JINGUBANG-like [Juglans regia]
TrEMBL	A0A4U5QZB5	Myosin heavy chain kinase B-like OS=Populus alba OX=43335 GN=D5086_0000020850 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	30	jg1037, jg10631, jg11931, jg13546, jg1569, jg17487, jg18131 ... jg18812, jg22821, jg23866, jg23867, jg25316, jg25319, jg25830, jg26635, jg28721, jg28722, jg28725, jg28726, jg30634, jg34575, jg34675, jg40094, jg416, jg5464, jg5543, jg6276, jg6995, jg7066, jg9423
Aizoaceae	Mesembryanthemum crystallinum	9	gene_13719, gene_16147, gene_16903, gene_21600, gene_3565 ... gene_3684, gene_5449, gene_6204, gene_8737
Amaranthaceae	Atriplex hortensis	4	Ah028462, Ah034963, Ah034966, Ah034967
Amaranthaceae	Beta vulgaris	7	BVRB_2g032230, BVRB_2g032270, BVRB_2g032280, BVRB_5g116270 ... BVRB_6g138430, BVRB_6g147330, BVRB_9g218230
Amaranthaceae	Salicornia bigelovii	15	Sbi_jg12508, Sbi_jg18895, Sbi_jg23537, Sbi_jg26685 ... Sbi_jg30464, Sbi_jg37349, Sbi_jg42786, Sbi_jg43053, Sbi_jg43373, Sbi_jg45412, Sbi_jg45653, Sbi_jg45805, Sbi_jg51540, Sbi_jg5805, Sbi_jg58786
Amaranthaceae	Salicornia europaea	8	Seu_jg11272, Seu_jg11497, Seu_jg13560, Seu_jg15197 ... Seu_jg18519, Seu_jg20167, Seu_jg28655, Seu_jg5188
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00002013, GOSA_00011788, GOSA_00018201, GOSA_00018202 ... GOSA_00018205, GOSA_00020757
Amaranthaceae	Suaeda glauca	20	Sgl02806, Sgl03463, Sgl07933, Sgl22686, Sgl27809, Sgl34186 ... Sgl35160, Sgl35814, Sgl39483, Sgl39532, Sgl40539, Sgl41083, Sgl62251, Sgl66318, Sgl66797, Sgl66799, Sgl70653, Sgl73997, Sgl77501, Sgl83340
Amaranthaceae	Chenopodium album	20	gene:ENSEOMG00000000974, gene:ENSEOMG00000003923 ... gene:ENSEOMG00000003992, gene:ENSEOMG00000007607, gene:ENSEOMG00000009356, gene:ENSEOMG00000010442, gene:ENSEOMG00000016539, gene:ENSEOMG00000017322, gene:ENSEOMG00000021579, gene:ENSEOMG00000024332, gene:ENSEOMG00000024718, gene:ENSEOMG00000027009, gene:ENSEOMG00000030098, gene:ENSEOMG00000030375, gene:ENSEOMG00000036836, gene:ENSEOMG00000038983, gene:ENSEOMG00000042950, gene:ENSEOMG00000045733, gene:ENSEOMG00000048471, gene:ENSEOMG00000050455
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.2AG0015720, CQ.Regalona.r1.2BG0006280 ... CQ.Regalona.r1.2BG0017690, CQ.Regalona.r1.2BG0017700, CQ.Regalona.r1.2BG0017720, CQ.Regalona.r1.3AG0022050, CQ.Regalona.r1.4AG0022060, CQ.Regalona.r1.5BG0023520, CQ.Regalona.r1.6AG0004030, CQ.Regalona.r1.6AG0006480, CQ.Regalona.r1.6BG0004080, CQ.Regalona.r1.6BG0006950, CQ.Regalona.r1.7AG0008800, CQ.Regalona.r1.7BG0008370, CQ.Regalona.r1.9AG0016080, CQ.Regalona.r1.9BG0008910
Anacardiaceae	Pistacia vera	3	pistato.v30124220, pistato.v30124870, pistato.v30140380
Apiaceae	Apium graveolens	19	Ag10G00030, Ag10G00142, Ag10G01845, Ag1G00227, Ag1G01090 ... Ag1G01097, Ag2G00311, Ag3G02614, Ag4G00157, Ag4G02776, Ag5G02254, Ag6G00354, Ag6G02592, Ag7G00313, Ag7G01072, Ag9G00128, Ag9G01259, AgUnG01010, AgUnG01190
Arecaceae	Cocos nucifera	9	COCNU_01G009640, COCNU_02G003800, COCNU_02G013490 ... COCNU_02G015460, COCNU_06G017820, COCNU_11G008620, COCNU_14G010090, COCNU_16G002560, scaffold013069G000010
Arecaceae	Phoenix dactylifera	10	gene-LOC103696502, gene-LOC103698649, gene-LOC103699858 ... gene-LOC103701469, gene-LOC103704980, gene-LOC103709167, gene-LOC103710063, gene-LOC103714691, gene-LOC103715831, gene-LOC120113156
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.1148.V1.1, AsparagusV1_07.3086.V1.1 ... AsparagusV1_08.733.V1.1
Asteraceae	Flaveria trinervia	22	Ftri10G08519, Ftri11G03915, Ftri11G21808, Ftri12G05307 ... Ftri12G33863, Ftri13G03471, Ftri13G13634, Ftri15G17605, Ftri16G12763, Ftri18G21629, Ftri18G25289, Ftri18G30779, Ftri1G08596, Ftri1G13998, Ftri1G21799, Ftri3G03388, Ftri3G29754, Ftri5G14208, Ftri5G18593, Ftri6G12971, Ftri8G10165, Ftri9G07276
Brassicaceae	Arabidopsis thaliana	10	AT1G24130.1, AT1G24530.1, AT1G47610.1, AT1G49450.1 ... AT2G26490.1, AT3G18950.1, AT3G50390.1, AT3G51930.1, AT4G34380.1, AT5G50120.1
Brassicaceae	Eutrema salsugineum	10	Thhalv10001249m.g.v1.0, Thhalv10007766m.g.v1.0 ... Thhalv10010028m.g.v1.0, Thhalv10010350m.g.v1.0, Thhalv10010951m.g.v1.0, Thhalv10011440m.g.v1.0, Thhalv10011601m.g.v1.0, Thhalv10013770m.g.v1.0, Thhalv10020683m.g.v1.0, Thhalv10026871m.g.v1.0
Brassicaceae	Schrenkiella parvula	10	Sp1g21460.v2.2, Sp1g23260.v2.2, Sp1g34640.v2.2 ... Sp1g36290.v2.2, Sp3g17040.v2.2, Sp4g07400.v2.2, Sp5g10340.v2.2, Sp5g11770.v2.2, Sp6g11990.v2.2, Sp7g32170.v2.2
Brassicaceae	Brassica nigra	17	BniB01g045430.2N, BniB02g025350.2N, BniB02g075270.2N ... BniB02g086970.2N, BniB03g020620.2N, BniB04g039370.2N, BniB04g041390.2N, BniB04g063430.2N, BniB05g003930.2N, BniB06g066770.2N, BniB07g006480.2N, BniB07g030250.2N, BniB07g051560.2N, BniB08g033920.2N, BniB08g064330.2N, BniB08g066070.2N, BniB08g066090.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0318
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno04g05540, gene.Cymno06g00370, gene.Cymno09g07160 ... gene.Cymno10g02170, gene.Cymno15g07300
Dunaliellaceae	Dunaliella salina	2	Dusal.0228s00015.v1.0, Dusal.2627s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g30550, gene.Thate03g05330, gene.Thate04g23140 ... gene.Thate05g15290, gene.Thate07g16830
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-1785, nbisL1-mrna-3911, nbisL1-mrna-5178 ... nbisL1-mrna-5624, nbisL1-mrna-7067
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG03.125, evm.TU.LG03.2585, evm.TU.LG03.659 ... evm.TU.LG03.909, evm.TU.LG06.514
Plantaginaceae	Plantago ovata	13	Pov_00007560, Pov_00015384, Pov_00019679, Pov_00022054 ... Pov_00022271, Pov_00024019, Pov_00026810, Pov_00030814, Pov_00033427, Pov_00035544, Pov_00039290, Pov_00039318, Pov_00041339
Plumbaginaceae	Limonium bicolor	8	Lb1G02291, Lb1G05964, Lb1G05968, Lb2G12982, Lb2G13392 ... Lb3G17197, Lb3G17205, Lb8G35908
Poaceae	Echinochloa crus-galli	23	AH01.1108, AH01.1183, AH02.4485, AH02.79, AH04.1770, BH02.69 ... AH05.3923, AH06.979, AH09.1328, BH01.809, BH02.4538, BH05.4003, BH06.1003, BH09.1507, CH01.1465, CH01.826, CH02.4587, CH02.80, CH04.2192, CH05.4209, CH06.1100, CH08.193, Contig309.154
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0000740, gene-QOZ80_1AG0046280 ... gene-QOZ80_1BG0049230, gene-QOZ80_2AG0145140, gene-QOZ80_2BG0200650, gene-QOZ80_3AG0216950, gene-QOZ80_3AG0225690, gene-QOZ80_3BG0262310, gene-QOZ80_3BG0270780, gene-QOZ80_4AG0313380, gene-QOZ80_5AG0396310, gene-QOZ80_5BG0444570, gene-QOZ80_6AG0515310
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0176040.1.CDS1 ... HORVU.MOREX.r3.3HG0249210.1.CDS1, HORVU.MOREX.r3.4HG0341390.1.CDS1, HORVU.MOREX.r3.4HG0341400.1.CDS1, HORVU.MOREX.r3.5HG0509220.1.CDS1, HORVU.MOREX.r3.7HG0667840.1.CDS1
Poaceae	Lolium multiflorum	14	gene-QYE76_000468, gene-QYE76_000469, gene-QYE76_000471 ... gene-QYE76_006889, gene-QYE76_029003, gene-QYE76_044578, gene-QYE76_044730, gene-QYE76_051582, gene-QYE76_052179, gene-QYE76_052180, gene-QYE76_057963, gene-QYE76_061999, gene-QYE76_063599, gene-QYE76_063600
Poaceae	Oryza coarctata	15	Oco01G005890, Oco01G029810, Oco02G005970, Oco02G030960 ... Oco03G021230, Oco04G021860, Oco05G018380, Oco05G023070, Oco06G019160, Oco06G023950, Oco08G008710, Oco11G006370, Oco12G006390, Oco23G009590, Oco24G009320
Poaceae	Oryza sativa	9	LOC_Os01g13140.1, LOC_Os01g28050.1, LOC_Os01g71780.1 ... LOC_Os02g50740.1, LOC_Os03g42710.1, LOC_Os03g52870.1, LOC_Os04g40560.1, LOC_Os06g13140.1, LOC_Os12g40260.1
Poaceae	Paspalum vaginatum	9	gene-BS78_01G087600, gene-BS78_01G150800, gene-BS78_K067400 ... gene-BS78_03G005500, gene-BS78_04G274100, gene-BS78_06G137100, gene-BS78_08G127900, gene-BS78_10G102300, gene-BS78_K140600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0207360
Poaceae	Sporobolus alterniflorus	21	Chr01G005750, Chr01G009920, Chr02G001210, Chr04G028260 ... Chr05G033440, Chr07G027120, Chr09G020490, Chr11G018780, Chr11G019020, Chr12G027010, Chr12G031590, Chr13G004660, Chr14G003790, Chr14G017380, Chr19G008280, Chr21G016270, Chr23G010410, Chr25G009250, Chr26G009340, Chr27G008340, Chr30G009140
Poaceae	Thinopyrum elongatum	8	Tel2E01G590400, Tel3E01G272700, Tel3E01G779200 ... Tel4E01G116000, Tel4E01G116300, Tel5E01G133900, Tel5E01G603400, Tel7E01G357300
Poaceae	Triticum dicoccoides	17	gene_TRIDC2AG049400, gene_TRIDC2BG052150 ... gene_TRIDC3AG021100, gene_TRIDC3AG068340, gene_TRIDC3BG031280, gene_TRIDC3BG077410, gene_TRIDC4AG038280, gene_TRIDC4AG038300, gene_TRIDC4BG011080, gene_TRIDC4BG011100, gene_TRIDC4BG011120, gene_TRIDC5AG009920, gene_TRIDC5AG055460, gene_TRIDC5BG011550, gene_TRIDC5BG059430, gene_TRIDC7AG024350, gene_TRIDC7BG014990
Poaceae	Triticum aestivum	25	TraesCS2A02G324000.1.cds1, TraesCS2B02G358100.1.cds1 ... TraesCS2D02G338900.1.cds1, TraesCS3A02G156000.1.cds1, TraesCS3A02G485100.1.cds1, TraesCS3B02G182500.1.cds1, TraesCS3B02G532800.1.cds1, TraesCS3D02G163800.1.cds1, TraesCS3D02G480400.1.cds1, TraesCS4A02G242800.1.cds1, TraesCS4A02G242900.1.cds1, TraesCS4B02G072100.1.cds1, TraesCS4B02G072200.1.cds1, TraesCS4B02G072300.1.cds1, TraesCS4D02G071000.1.cds1, TraesCS4D02G071100.1.cds1, TraesCS5A02G063900.1.cds1, TraesCS5A02G379200.1.cds1, TraesCS5B02G068600.1.cds1, TraesCS5B02G382700.1.cds1, TraesCS5D02G074900.1.cds1, TraesCS5D02G389000.1.cds1, TraesCS7A02G195200.1, TraesCS7B02G100800.1.cds1, TraesCS7D02G196700.1
Poaceae	Zea mays	10	Zm00001eb030650_P001, Zm00001eb051240_P001 ... Zm00001eb056560_P001, Zm00001eb079390_P001, Zm00001eb119190_P001, Zm00001eb135250_P001, Zm00001eb215260_P001, Zm00001eb254150_P001, Zm00001eb339280_P001, Zm00001eb425020_P001
Poaceae	Zoysia japonica	10	nbis-gene-10852, nbis-gene-21885, nbis-gene-24056 ... nbis-gene-24265, nbis-gene-28181, nbis-gene-36899, nbis-gene-44622, nbis-gene-50660, nbis-gene-7386, nbis-gene-8760
Poaceae	Zoysia macrostachya	10	Zma_g11926, Zma_g14396, Zma_g17116, Zma_g19927, Zma_g21478 ... Zma_g25270, Zma_g2836, Zma_g517, Zma_g925, Zma_g9497
Portulacaceae	Portulaca oleracea	18	evm.TU.LG02.631, evm.TU.LG02.632, evm.TU.LG03.350 ... evm.TU.LG04.1194, evm.TU.LG04.1705, evm.TU.LG05.1731, evm.TU.LG07.955, evm.TU.LG08.1865, evm.TU.LG09.1652, evm.TU.LG09.2046, evm.TU.LG10.348, evm.TU.LG10.435, evm.TU.LG12.1358, evm.TU.LG13.137, evm.TU.LG17.344, evm.TU.LG17.432, evm.TU.LG23.353, evm.TU.LG23.354
Posidoniaceae	Posidonia oceanica	7	gene.Posoc01g09990, gene.Posoc02g00850, gene.Posoc03g28170 ... gene.Posoc04g06770, gene.Posoc06g04930, gene.Posoc07g14780, gene.Posoc08g03120
Rhizophoraceae	Bruguiera sexangula	13	evm.TU.Scaffold_10_RagTag.771, evm.TU.Scaffold_11_RagTag.978 ... evm.TU.Scaffold_15_RagTag.699, evm.TU.Scaffold_15_RagTag.805, evm.TU.Scaffold_17_RagTag.283, evm.TU.Scaffold_18_RagTag.555, evm.TU.Scaffold_1_RagTag.2149, evm.TU.Scaffold_2_RagTag.261, evm.TU.Scaffold_4_RagTag.511, evm.TU.Scaffold_6_RagTag.1940, evm.TU.Scaffold_7_RagTag.277, evm.TU.Scaffold_8_RagTag.1046, evm.TU.Scaffold_8_RagTag.977
Rhizophoraceae	Carallia pectinifolia	13	nbisL1-mrna-13716, nbisL1-mrna-14658, nbisL1-mrna-17194 ... nbisL1-mrna-19107, nbisL1-mrna-19447, nbisL1-mrna-26884, nbisL1-mrna-27933, nbisL1-mrna-27955, nbisL1-mrna-28856, nbisL1-mrna-4938, nbisL1-mrna-5957, nbisL1-mrna-8518, nbisL1-mrna-8973
Rhizophoraceae	Ceriops tagal	10	nbisL1-mrna-11256, nbisL1-mrna-11742, nbisL1-mrna-12042 ... nbisL1-mrna-17145, nbisL1-mrna-17538, nbisL1-mrna-19117, nbisL1-mrna-300, nbisL1-mrna-4772, nbisL1-mrna-6712, nbisL1-mrna-84
Rhizophoraceae	Ceriops zippeliana	11	nbisL1-mrna-11852, nbisL1-mrna-12547, nbisL1-mrna-15408 ... nbisL1-mrna-15593, nbisL1-mrna-15685, nbisL1-mrna-1824, nbisL1-mrna-3387, nbisL1-mrna-7014, nbisL1-mrna-7968, nbisL1-mrna-9014, nbisL1-mrna-9866
Rhizophoraceae	Kandelia candel	12	add.evm.TU.utg000001l.207, add.evm.TU.utg000001l.228 ... add.evm.TU.utg000008l.122, add.evm.TU.utg000009l.297, add.evm.TU.utg000010l.32, add.evm.TU.utg000011l.489, add.evm.TU.utg000016l.65, add.evm.TU.utg000018l.138, add.evm.TU.utg000019l.439, add.evm.TU.utg000028l.77, add.evm.TU.utg000033l.172, evm.TU.utg000023l.125
Rhizophoraceae	Kandelia obovata	1	Maker00015146
Rhizophoraceae	Rhizophora apiculata	12	nbisL1-mrna-17057, nbisL1-mrna-18610, nbisL1-mrna-19082 ... nbisL1-mrna-20265, nbisL1-mrna-20579, nbisL1-mrna-21180, nbisL1-mrna-21201, nbisL1-mrna-22628, nbisL1-mrna-22682, nbisL1-mrna-23019, nbisL1-mrna-3845, nbisL1-mrna-7363
Rhizophoraceae	Rhizophora mangle	12	nbisL1-mrna-12457, nbisL1-mrna-1302, nbisL1-mrna-14078 ... nbisL1-mrna-1494, nbisL1-mrna-17713, nbisL1-mrna-17804, nbisL1-mrna-20201, nbisL1-mrna-21318, nbisL1-mrna-24083, nbisL1-mrna-3158, nbisL1-mrna-7952, nbisL1-mrna-8617
Salicaceae	Populus euphratica	14	populus_peu04294, populus_peu08930, populus_peu08943 ... populus_peu12757, populus_peu14270, populus_peu21732, populus_peu23479, populus_peu28583, populus_peu30008, populus_peu30050, populus_peu31941, populus_peu33618, populus_peu35110, populus_peu36416
Solanaceae	Lycium barbarum	13	gene-LOC132599117, gene-LOC132603694, gene-LOC132604115 ... gene-LOC132617584, gene-LOC132617943, gene-LOC132623461, gene-LOC132627939, gene-LOC132634181, gene-LOC132634241, gene-LOC132638339, gene-LOC132641186, gene-LOC132641423, gene-LOC132644844
Solanaceae	Solanum chilense	14	SOLCI000185000, SOLCI000446200, SOLCI000569500 ... SOLCI002153000, SOLCI003385100, SOLCI003581100, SOLCI004364300, SOLCI004735400, SOLCI005880100, SOLCI005920900, SOLCI006148000, SOLCI006760000, SOLCI007094900, SOLCI007325200
Solanaceae	Solanum pennellii	12	gene-LOC107005814, gene-LOC107006569, gene-LOC107010525 ... gene-LOC107013299, gene-LOC107014008, gene-LOC107014143, gene-LOC107017348, gene-LOC107018005, gene-LOC107018731, gene-LOC107018732, gene-LOC107024679, gene-LOC107027261
Tamaricaceae	Reaumuria soongarica	11	STRG.11380_chr02_-, gene_10074, gene_10402, gene_11237 ... gene_15153, gene_15964, gene_16820, gene_18169, gene_1920, gene_2125, gene_2361
Tamaricaceae	Tamarix chinensis	9	TC02G0375, TC02G0710, TC03G1192, TC04G2331, TC08G2561 ... TC09G1193, TC10G0534, TC10G1988, TC12G1078
Zosteraceae	Zostera marina	5	Zosma01g01280.v3.1, Zosma01g16150.v3.1, Zosma02g25900.v3.1 ... Zosma03g02910.v3.1, Zosma03g16790.v3.1