Basic Information
Locus ID:
nbisL1-mrna-3844
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 11226110 | 11231592 | + | nbisL1-mrna-3844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 50,327.93 Da | 32.53 | 100.95 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 170 | 389 | 7.5E-67 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 168 | 388 | 9.46E-32 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 148 | 439 | 1.6E-80 | IPR027417 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 323 | 394 | 19.671198 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 175 | 307 | 13.792773 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 335 | 343 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 240 | 269 | 8.8E-56 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 365 | 394 | 8.8E-56 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 206 | 235 | 8.8E-56 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 332 | 360 | 8.8E-56 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 278 | 307 | 8.8E-56 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_011039451.1 | - | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J3I4 | DNA repair protein recA homolog 2-like isoform X1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology