Basic Information
Locus ID:
nbisL1-mrna-380
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1783164 | 1795625 | - | nbisL1-mrna-380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 115,984.03 Da | 37.90 | 85.69 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 44 | 320 | 0.0 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 909 | 1015 | 1.2E-7 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 356 | 9.3E-96 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 616 | 827 | 2.0E-44 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 361 | 451 | 3.3E-18 | IPR015341 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 361 | 458 | 2.03E-26 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 465 | 1019 | 6.12E-141 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 33 | 359 | 2.5E-111 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1180 | - | 481 | 610 | 1.2E-30 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 325 | 403 | 1.9E-30 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 324 | 8.6E-122 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 611 | 875 | 2.4E-92 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 404 | 459 | 3.3E-19 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 895 | 1024 | 8.8E-33 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 361 | 435 | 1.6E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_043812025.1 | alpha-mannosidase At3g26720 isoform X1 [Manihot esculenta] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MM01 | Alpha-mannosidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology