halophFGD

Basic Information

Locus ID: nbisL1-mrna-3796

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	10702686	10704871	-	nbisL1-mrna-3796

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.42	26,887.68 Da	68.75	74.08	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14279	CUE	51	79	3.58164E-5	-
SUPERFAMILY	SSF46934	UBA-like	45	88	1.53E-5	IPR009060
Gene3D	G3DSA:1.10.8.10	-	42	89	1.1E-5	-
ProSiteProfiles	PS51140	CUE domain profile.	41	84	11.790178	IPR003892

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0043130 (ubiquitin binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G02510.2	-
RefSeq	XP_015580005.1	-
TrEMBL	A0A2P2JNY6	CUE domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13494, jg18253, jg25445, jg31708, jg33047
Aizoaceae	Mesembryanthemum crystallinum	3	gene_26213, gene_7277, gene_8961
Amaranthaceae	Atriplex hortensis	2	Ah010552, Ah014301
Amaranthaceae	Beta vulgaris	2	BVRB_8g193840, BVRB_9g219250
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg25638, Sbi_jg25639, Sbi_jg31576, Sbi_jg9443
Amaranthaceae	Salicornia europaea	2	Seu_jg19163, Seu_jg19164
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005155, GOSA_00011001
Amaranthaceae	Suaeda glauca	5	Sgl09606, Sgl41985, Sgl46759, Sgl56382, Sgl61913
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000009749, gene:ENSEOMG00000017224 ... gene:ENSEOMG00000033212, gene:ENSEOMG00000039431, gene:ENSEOMG00000047085, gene:ENSEOMG00000051048
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7BG0009740, CQ.Regalona.r1.8AG0022370 ... CQ.Regalona.r1.8BG0020060, CQ.Regalona.r1.9AG0014890
Anacardiaceae	Pistacia vera	3	pistato.v30128490, pistato.v30261410, pistato.v30271050
Apiaceae	Apium graveolens	3	Ag4G00112, Ag4G01643, Ag9G01179
Arecaceae	Cocos nucifera	4	COCNU_01G010680, COCNU_01G018720, COCNU_04G015050 ... COCNU_11G007870
Arecaceae	Phoenix dactylifera	5	gene-LOC103703441, gene-LOC103704320, gene-LOC103706495 ... gene-LOC103711481, gene-LOC103723021
Asparagaceae	Asparagus officinalis	7	AsparagusV1_02.163.V1.1, AsparagusV1_03.1996.V1.1 ... AsparagusV1_05.195.V1.1, AsparagusV1_05.3273.V1.1, AsparagusV1_06.56.V1.1, AsparagusV1_07.236.V1.1, AsparagusV1_08.2579.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G15972, Ftri18G30768, Ftri4G00145
Brassicaceae	Arabidopsis thaliana	3	AT1G80040.3, AT5G02510.1, AT5G32440.3
Brassicaceae	Eutrema salsugineum	2	Thhalv10003459m.g.v1.0, Thhalv10019034m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g25410.v2.2, Sp5g35810.v2.2, Sp6g40000.v2.2
Brassicaceae	Brassica nigra	6	BniB03g016590.2N, BniB03g033830.2N, BniB04g044050.2N ... BniB06g051740.2N, BniB06g068730.2N, BniB07g019110.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0329, Ceq02G2697, Ceq06G0588, Ceq08G1185
Casuarinaceae	Casuarina glauca	5	Cgl02G0343, Cgl02G2794, Cgl02G2795, Cgl06G0607, Cgl08G1211
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g07390, gene.Cymno17g04840
Dunaliellaceae	Dunaliella salina	1	Dusal.0257s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g33830, gene.Thate04g29140
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8142
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1267, evm.TU.LG01.502, evm.TU.LG07.644
Plantaginaceae	Plantago ovata	7	Pov_00004064, Pov_00004070, Pov_00004080, Pov_00004185 ... Pov_00011446, Pov_00020219, Pov_00036935
Plumbaginaceae	Limonium bicolor	5	Lb6G32053, Lb6G32054, Lb6G32346, Lb6G32349, Lb6G32351
Poaceae	Echinochloa crus-galli	9	AH03.1254, AH06.2423, AH07.619, BH03.1354, BH06.2221 ... BH07.743, CH01.1612, CH03.1558, CH06.2441
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0104100, gene-QOZ80_2BG0157430 ... gene-QOZ80_6AG0523460, gene-QOZ80_6AG0546130, gene-QOZ80_6BG0476400, gene-QOZ80_6BG0499520
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.5HG0468390.1, HORVU.MOREX.r3.6HG0567800.1 ... HORVU.MOREX.r3.7HG0745710.1
Poaceae	Lolium multiflorum	4	gene-QYE76_003976, gene-QYE76_007591, gene-QYE76_037753 ... gene-QYE76_053727
Poaceae	Oryza coarctata	6	Oco03G004320, Oco04G004310, Oco11G013630, Oco12G013800 ... Oco17G000390, Oco18G000350
Poaceae	Oryza sativa	4	LOC_Os02g09180.1, LOC_Os06g43550.1, LOC_Os08g22200.1 ... LOC_Os09g03090.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G063800, gene-BS78_07G182100 ... gene-BS78_10G204200
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0202276, Pt_Chr0207104, Pt_Chr0401681, Pt_Chr0401686 ... Pt_Chr0705001, Pt_Chr0705265
Poaceae	Sporobolus alterniflorus	7	Chr02G030680, Chr05G008430, Chr06G033760, Chr10G018840 ... Chr11G003800, Chr11G014510, Chr15G025000
Poaceae	Thinopyrum elongatum	4	Tel5E01G277900, Tel5E01G765900, Tel6E01G302000 ... Tel7E01G906900
Poaceae	Triticum dicoccoides	6	gene_TRIDC5AG026940, gene_TRIDC5BG028050 ... gene_TRIDC6AG019830, gene_TRIDC6BG025830, gene_TRIDC7AG073100, gene_TRIDC7BG069300
Poaceae	Triticum aestivum	11	TraesCS5A02G162300.2, TraesCS5B02G159800.1 ... TraesCS5B02G495600.1.cds1, TraesCS5B02G501600.1.cds1, TraesCS5D02G166600.1, TraesCS6A02G144700.3, TraesCS6B02G172800.1, TraesCS6D02G133600.4, TraesCS7A02G521400.1, TraesCS7B02G438200.1, TraesCS7D02G510900.1
Poaceae	Zea mays	3	Zm00001eb234410_P002, Zm00001eb275390_P001 ... Zm00001eb387140_P001
Poaceae	Zoysia japonica	4	nbis-gene-33564, nbis-gene-40924, nbis-gene-44151 ... nbis-gene-9933
Poaceae	Zoysia macrostachya	4	Zma_g12327, Zma_g15078, Zma_g30878, Zma_g33127
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1261, evm.TU.LG11.608, evm.TU.LG16.1618 ... evm.TU.LG26.49
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g15390, gene.Posoc07g14910, gene.Posoc10g04450
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_10_RagTag.65, evm.TU.Scaffold_1_RagTag.1189 ... evm.TU.Scaffold_2_RagTag.1156, evm.TU.Scaffold_3_RagTag.219, evm.TU.Scaffold_4_RagTag.2287
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-12885, nbisL1-mrna-25154, nbisL1-mrna-28118 ... nbisL1-mrna-3796, nbisL1-mrna-403, nbisL1-mrna-467
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12238, nbisL1-mrna-20622, nbisL1-mrna-8495
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16503, nbisL1-mrna-18842, nbisL1-mrna-5033
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.1342, evm.TU.utg000009l.535 ... evm.TU.utg000033l.44
Rhizophoraceae	Kandelia obovata	3	Maker00000900, Maker00006075, Maker00014954
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16729, nbisL1-mrna-1840, nbisL1-mrna-19371
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14469, nbisL1-mrna-22317, nbisL1-mrna-2353 ... nbisL1-mrna-5573
Salicaceae	Populus euphratica	3	populus_peu05735, populus_peu11108, populus_peu14207
Solanaceae	Lycium barbarum	5	gene-LOC132598783, gene-LOC132603141, gene-LOC132603644 ... gene-LOC132633004, gene-LOC132636970
Solanaceae	Solanum chilense	4	SOLCI002672200, SOLCI005010900, SOLCI005922400 ... SOLCI007110800
Solanaceae	Solanum pennellii	7	gene-LOC107005314, gene-LOC107005705, gene-LOC107012222 ... gene-LOC107021644, gene-LOC107022438, gene-LOC107022440, gene-LOC107025898
Tamaricaceae	Reaumuria soongarica	3	STRG.19239_chr07_-, STRG.27479_chr04_+, gene_8985
Tamaricaceae	Tamarix chinensis	3	TC02G2586, TC08G2217, TC10G1269
Zosteraceae	Zostera marina	2	Zosma02g00530.v3.1, Zosma03g23440.v3.1