Basic Information
Locus ID:
nbisL1-mrna-379
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1766141 | 1781508 | - | nbisL1-mrna-379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 199,357.88 Da | 43.89 | 77.91 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 315 | 2.74545E-175 | - |
| CDD | cd16536 | RING-HC_RNF10 | 1274 | 1321 | 1.5487E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 1274 | 1320 | 3.6E-5 | IPR018957 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 604 | 819 | 3.7E-44 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 351 | 1.9E-93 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 356 | 448 | 2.6E-22 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1013 | 1.2E-10 | IPR041147 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1273 | 1327 | 1.46E-11 | - |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 460 | 1016 | 6.59E-140 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 356 | 455 | 3.92E-29 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 352 | 1.45E-105 | IPR011330 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 319 | 1.0E-119 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 398 | 7.2E-31 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 886 | 1019 | 1.1E-34 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 867 | 2.8E-91 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 455 | 1.1E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 477 | 601 | 7.6E-27 | IPR013780 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1268 | 1335 | 2.9E-11 | IPR013083 |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 430 | 1.4E-24 | IPR015341 |
| SMART | SM00184 | ring_2 | 1274 | 1320 | 7.4E-7 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | 6.0 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1274 | 1320 | 11.618851 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1289 | 1298 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1160 | 1184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1744 | 1776 | - | - |
| Coils | Coil | Coil | 948 | 968 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_011033760.1 | PREDICTED: alpha-mannosidase-like isoform X1 [Populus euphratica] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0DQ56 | alpha-mannosidase OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR22404 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology