Basic Information
Locus ID:
nbisL1-mrna-3788
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 54662658 | 54670690 | + | nbisL1-mrna-3788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 84,956.18 Da | 48.74 | 84.36 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 434 | 508 | 4.44709E-48 | - |
| CDD | cd12352 | RRM1_TIA1_like | 350 | 420 | 5.03614E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 435 | 505 | 3.3E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 601 | 648 | 1.3E-4 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 350 | 416 | 3.4E-12 | IPR000504 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 40 | 143 | 3.1E-21 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 170 | 242 | 3.7E-11 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 23 | 145 | 6.48E-30 | IPR038765 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 427 | 513 | 2.96E-25 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 602 | 671 | 1.49E-10 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 334 | 426 | 3.9E-22 | IPR035979 |
| Gene3D | G3DSA:1.10.1370.40 | - | 228 | 290 | 2.3E-5 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 535 | 671 | 8.3E-17 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 342 | 426 | 1.7E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 427 | 526 | 4.5E-24 | IPR012677 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 11 | 156 | 1.3E-28 | - |
| SMART | SM00360 | rrm1_1 | 349 | 418 | 5.9E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 560 | 663 | 0.008 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 434 | 507 | 2.8E-22 | IPR000504 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 158 | 18.945583 | IPR028889 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 348 | 422 | 15.101589 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 433 | 511 | 16.414856 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 559 | 667 | 11.468789 | IPR000504 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 100 | 117 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_038995277.1 | oligouridylate-binding protein 1B-like isoform X1 [Hibiscus syriacus] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2SXY7 | Oligouridylate-binding protein 1B-like OS=Gossypium raimondii OX=29730 GN=B456_010G235400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology