Basic Information
Locus ID:
nbisL1-mrna-3785
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 3666098 | 3667156 | + | nbisL1-mrna-3785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 38,695.26 Da | 63.55 | 71.45 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 188 | 229 | 1.38546E-22 | - |
| Pfam | PF13639 | Ring finger domain | 187 | 229 | 4.2E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 13 | 43 | 1.8E-9 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 253 | 344 | 1.3E-30 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 234 | 7.73E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 235 | 1.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 228 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 229 | 12.120453 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_021657424.1 | E3 ubiquitin-protein ligase RDUF2-like [Hevea brasiliensis] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P5EZ78 | RING-type E3 ubiquitin transferase OS=Trema orientale OX=63057 GN=TorRG33x02_134770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology