Basic Information
Locus ID:
nbisL1-mrna-3779
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Probably inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 10508503 | 10511945 | - | nbisL1-mrna-3779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 96,202.04 Da | 43.49 | 106.94 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 603 | 861 | 7.8E-36 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 64 | 2.9E-12 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 119 | 178 | 4.7E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 457 | 478 | 1.4 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 602 | 862 | 3.6E-59 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 25 | 301 | 3.97E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 204 | 522 | 2.89E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 588 | 669 | 8.5E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 670 | 880 | 5.0E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 237 | 1.2E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 243 | 525 | 2.9E-71 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 184 | 5.0E-44 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 189 | 214 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 263 | 287 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 164 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 238 | 261 | 0.081 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 454 | 477 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 188 | 7.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 456 | 479 | 7.303818 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 594 | 871 | 31.071491 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 241 | 254 | 8.3E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 454 | 467 | 8.3E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06940.1 | Leucine-rich repeat receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_006381028.2 | probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Populus trichocarpa] | 0 |
| Q9FL51 | Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana OX=3702 GN=At5g06940 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2MY02 | Receptor protein kinase CLAVATA1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15939, jg4372 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19072 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021687 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g060970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59254, Sbi_jg63379 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23513 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018421 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl23762 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013500, gene:ENSEOMG00000029572 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0021250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30187100 |
| Apiaceae | Apium graveolens | 1 | AgUnG01348 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717743 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1243.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G33055 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012646m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35930.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1109 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1278 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08490 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2442 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006615 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4085, BH09.1445, CH09.1555 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0313910, gene-QOZ80_4BG0345070 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0174810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044667 |
| Poaceae | Oryza coarctata | 2 | Oco07G008350, Oco08G008250 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g39650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G131200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302333, Pt_Chr0302386 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G010820, Chr25G008940, Chr26G008900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G582400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048640, gene_TRIDC2BG051300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G330000.1, TraesCS2B02G352300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb424770_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7420 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21450 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.524, evm.TU.LG15.421 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1142 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3779 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16334 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18858 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.547 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005536 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12451 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5592 |
| Salicaceae | Populus euphratica | 2 | populus_peu11002, populus_peu26138 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634023 |
| Solanaceae | Solanum chilense | 1 | SOLCI006941300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012870 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6957_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2411 |