Basic Information
Locus ID:
nbisL1-mrna-3776
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
EBF2
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2280904 | 2283724 | - | nbisL1-mrna-3776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 70,359.66 Da | 46.38 | 106.28 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 251 | 274 | 0.23 | IPR001611 |
| Pfam | PF00646 | F-box domain | 67 | 107 | 1.9E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 277 | 300 | 1.3 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 226 | 249 | 0.0046 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 570 | 592 | 0.0088 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 185 | 651 | 1.2E-43 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 63 | 104 | 8.11E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 60 | 107 | 7.2E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 455 | 540 | 3.2E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 176 | 400 | 3.6E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 541 | 655 | 1.5E-19 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 278 | 303 | 0.0051 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 490 | 515 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 464 | 489 | 3.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 358 | 383 | 0.12 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 596 | 621 | 0.034 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 570 | 594 | 0.0059 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 226 | 251 | 5.5E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 384 | 409 | 0.72 | IPR006553 |
| SMART | SM00256 | fbox_2 | 70 | 110 | 1.7E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 410 | 435 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 252 | 277 | 1.6E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 200 | 225 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 544 | 569 | 20.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 517 | 542 | 490.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_021665595.1 | EIN3-binding F-box protein 1-like [Hevea brasiliensis] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K6Y0 | Grr1 plant OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology