Basic Information
Locus ID:
nbisL1-mrna-3763
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2168180 | 2172375 | - | nbisL1-mrna-3763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 62,639.87 Da | 28.33 | 105.81 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 433 | 529 | 2.6872E-24 | - |
| CDD | cd00030 | C2 | 259 | 361 | 1.31378E-23 | - |
| Pfam | PF00168 | C2 domain | 258 | 361 | 1.1E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 431 | 529 | 5.1E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 243 | 2.5E-14 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 427 | 550 | 1.4E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 255 | 386 | 1.16E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 250 | 385 | 1.4E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 413 | 550 | 1.2E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 258 | 358 | 1.3E-19 | IPR000008 |
| SMART | SM00239 | C2_3c | 432 | 530 | 1.3E-20 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 244 | 30.282898 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 238 | 359 | 19.334328 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 413 | 531 | 19.327225 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015572574.1 | synaptotagmin-4 [Ricinus communis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067KEY0 | Synaptotagmin-5 OS=Jatropha curcas OX=180498 GN=JCGZ_07139 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology