Basic Information
Locus ID:
nbisL1-mrna-3743
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 54252697 | 54258007 | - | nbisL1-mrna-3743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 54,649.54 Da | 42.82 | 108.58 | 0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 350 | 480 | 4.3E-11 | IPR011701 |
| Pfam | PF00083 | Sugar (and other) transporter | 59 | 228 | 3.5E-33 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 12 | 488 | 7.19E-66 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 20 | 491 | 4.3E-84 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 27 | 483 | 37.452179 | IPR020846 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_038995271.1 | LOW QUALITY PROTEIN: organic cation/carnitine transporter 7-like [Hibiscus syriacus] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5R557 | MFS domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D06G224900v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology