Basic Information
Locus ID:
nbisL1-mrna-3738
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1902862 | 1910728 | - | nbisL1-mrna-3738 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 82,265.41 Da | 44.99 | 58.39 | -1.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 487 | 533 | 0.00783931 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 484 | 524 | 9.78E-7 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 483 | 533 | 5.4E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 235 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021596484.1 | titin homolog isoform X1 [Manihot esculenta] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LRE7 | Tudor domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology