Basic Information
Locus ID:
nbisL1-mrna-372
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1723892 | 1726689 | - | nbisL1-mrna-372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 64,052.24 Da | 36.22 | 94.38 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 3 | 40 | 3.2E-19 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 6.4E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 16 | 529 | 7.65E-36 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 5.4E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 571 | 1.5E-174 | IPR032675 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 5.9E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 425 | 448 | 450.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 365 | 389 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 63.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 474 | 499 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 178 | 204 | 680.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 330.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 333 | 364 | 360.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_021610350.1 | protein AUXIN SIGNALING F-BOX 2 [Manihot esculenta] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JU50 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology