Basic Information
Locus ID:
nbisL1-mrna-3704
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1310463 | 1315853 | - | nbisL1-mrna-3704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 79,625.13 Da | 49.09 | 75.21 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 175 | 480 | 5.97246E-160 | - |
| CDD | cd00064 | FU | 66 | 107 | 8.96622E-4 | IPR006212 |
| Pfam | PF01753 | MYND finger | 69 | 106 | 1.1E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 176 | 479 | 6.4E-43 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 67 | 111 | 4.88E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 172 | 503 | 2.75E-86 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 56 | 111 | 1.9E-14 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 171 | 488 | 5.7E-88 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 176 | 482 | 47.713741 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 69 | 106 | 11.98292 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 177 | 192 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 69 | 106 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 722 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_034928192.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Populus alba] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LAN6 | Uncharacterized protein MANES_16G133800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology