Basic Information
Locus ID:
nbisL1-mrna-3679
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 53629264 | 53631294 | - | nbisL1-mrna-3679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 78,786.17 Da | 52.84 | 64.63 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 250 | 292 | 3.1E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 196 | 240 | 3.8E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 13 | 60 | 7.0E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 139 | 185 | 1.8E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 70 | 122 | 3.1E-6 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 37 | 131 | 1.38E-12 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 333 | 459 | 4.19E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 217 | 306 | 9.29E-21 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 533 | 617 | 4.0E-16 | - |
| SMART | SM00249 | PHD_3 | 266 | 311 | 2.7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 158 | 218 | 2.5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 323 | 375 | 5.6 | IPR001965 |
| SMART | SM00109 | c1_12 | 11 | 65 | 0.33 | IPR002219 |
| SMART | SM00249 | PHD_3 | 33 | 99 | 0.63 | IPR001965 |
| SMART | SM00109 | c1_12 | 252 | 307 | 0.12 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 10 | 67 | 8.9217 | IPR002219 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 34 | 98 | - | IPR019786 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44770.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_039060936.1 | uncharacterized protein LOC120205062 [Hibiscus syriacus] | 0 |
| TrEMBL | A0A5D2KMG5 | Phorbol-ester/DAG-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D06G223700v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |