Basic Information
Locus ID:
nbisL1-mrna-3655
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. Era GTPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 599260 | 602941 | - | nbisL1-mrna-3655 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 48,990.34 Da | 46.29 | 85.47 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04163 | Era | 144 | 321 | 1.88314E-57 | IPR030388 |
| Pfam | PF07650 | KH domain | 357 | 430 | 6.3E-9 | IPR004044 |
| Pfam | PF01926 | 50S ribosome-binding GTPase | 149 | 273 | 1.4E-16 | IPR006073 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 333 | 430 | 2.22E-23 | IPR009019 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 136 | 361 | 8.79E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 140 | 329 | 7.4E-35 | IPR027417 |
| Gene3D | G3DSA:3.30.300.20 | - | 335 | 430 | 5.1E-25 | IPR015946 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 146 | 317 | 3.3E-17 | IPR005225 |
| TIGRFAM | TIGR00436 | era: GTP-binding protein Era | 148 | 428 | 9.2E-46 | IPR005662 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 354 | 430 | 10.910475 | IPR004044 |
| ProSiteProfiles | PS51713 | Era-type guanine nucleotide-binding (G) domain profile. | 145 | 323 | 46.483456 | IPR030388 |
| Hamap | MF_00367 | GTPase Era [era]. | 144 | 430 | 20.97094 | IPR005662 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30960.1 | GTP-binding family protein. | 0 |
| RefSeq | XP_011035506.1 | PREDICTED: GTP-binding protein ERG [Populus euphratica] | 0 |
| O82653 | GTP-binding protein ERG OS=Arabidopsis thaliana OX=3702 GN=ERG PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2K7T4 | GTP-binding protein erg OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20935 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13057 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034274 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20585, Sbi_jg23161 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17016 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009179 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63457, Sgl67936 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019308, gene:ENSEOMG00000021619 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012960, CQ.Regalona.r1.2BG0014850 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30079420, pistato.v30079550 |
| Apiaceae | Apium graveolens | 1 | Ag9G02527 |
| Arecaceae | Cocos nucifera | 1 | scaffold004112G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723339 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1471.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16137 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G30960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007654m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g26820.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g046780.2N, BniB07g019730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0083 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0101 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g03750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20220 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.332 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012899 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12619 |
| Poaceae | Echinochloa crus-galli | 4 | AH08.634, BH08.647, BH08.694, CH08.772 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0621420, gene-QOZ80_8BG0649870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0692500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033035 |
| Poaceae | Oryza coarctata | 2 | Oco15G004190, Oco16G004000 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g10649.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G081700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0405432 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G002730, Chr17G002480, Chr29G009860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G489900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG038900, gene_TRIDC7BG031730 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G287000.1, TraesCS7B02G199400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb171110_P001, Zm00001eb413810_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51320 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22628 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.175, evm.TU.LG15.48 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08400 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1034 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13462 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.288 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003869 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3655 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7677 |
| Salicaceae | Populus euphratica | 2 | populus_peu02975, populus_peu33855 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622731 |
| Solanaceae | Solanum chilense | 1 | SOLCI005943300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009099 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1941 |
| Tamaricaceae | Tamarix chinensis | 3 | TC07G1526, TC07G1527, TC11G1842 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22520.v3.1 |