Basic Information
Locus ID:
nbisL1-mrna-3646
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Protein pleiotropic regulatory locus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 4680825 | 4687955 | + | nbisL1-mrna-3646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 57,967.68 Da | 35.66 | 80.53 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 192 | 500 | 1.28679E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 346 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 204 | 240 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 282 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 500 | 0.099 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 192 | 503 | 2.72E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 183 | 523 | 5.3E-88 | IPR015943 |
| SMART | SM00320 | WD40_4 | 349 | 387 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 282 | 7.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 285 | 346 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 240 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 500 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 450 | 1.5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 250 | 285 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 285 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 208 | 245 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 208 | 249 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 355 | 10.241105 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 269 | 283 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 333 | 347 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 227 | 241 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 269 | 283 | 3.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 131 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16650.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_028751709.1 | - | 0 |
| Q39190 | Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana OX=3702 GN=PRL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LLU1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1912 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18792 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002099, Ah033823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35628, Sbi_jg974 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3756 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023450 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68926 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005707, gene:ENSEOMG00000037008 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014140, CQ.Regalona.r1.7BG0015800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234300 |
| Apiaceae | Apium graveolens | 2 | Ag6G00181, Ag7G01606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G010210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698165, gene-LOC103703613 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.954.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G31554 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G16650.1, AT4G15900.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022263m.g.v1.0, Thhalv10025068m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g14940.v2.2, Sp7g14350.v2.2, SpUn1161_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g073630.2N, BniB05g020390.2N, BniB05g055790.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1130 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1227 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2647s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g04110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3028, nbisL1-mrna-5079 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1295 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028059, Pov_00028060, Pov_00031986 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33999 |
| Poaceae | Echinochloa crus-galli | 4 | AH09.193, BH01.2015, CH01.2103, Contig328.73 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0326650, gene-QOZ80_4BG0358680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0253650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_006901, gene-QYE76_052157 |
| Poaceae | Oryza coarctata | 4 | Oco05G013080, Oco06G013390, Oco17G009500, Oco18G009510 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g21990.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G027300, gene-BS78_K285100 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0604039, Pt_Chr0605301, Pt_Chr0700506, Pt_Chr0700560 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G031990, Chr05G009980, Chr10G020650, Chr11G001990 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G306400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG024390, gene_TRIDC3BG028110 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G175600.2, TraesCS3B02G205300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051300_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32015, nbis-gene-40598 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20885, Zma_g33273 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.493, evm.TU.LG21.187 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.588, evm.TU.Scaffold_6_RagTag.595 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16093 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15888 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-490 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.344 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007774 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12195, nbisL1-mrna-13734 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3646 |
| Salicaceae | Populus euphratica | 3 | populus_peu08061, populus_peu22219, populus_peu22229 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132612705, gene-LOC132633620, gene-LOC132633622 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004130400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008122, gene-LOC114073927 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2951 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1074 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25650.v3.1 |