Basic Information
Locus ID:
nbisL1-mrna-3643
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Condensin-2 complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 4665321 | 4671774 | + | nbisL1-mrna-3643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 149,373.94 Da | 48.87 | 100.36 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12717 | non-SMC mitotic condensation complex subunit 1 | 926 | 1116 | 7.8E-29 | IPR032682 |
| SUPERFAMILY | SSF48371 | ARM repeat | 315 | 1207 | 1.51E-30 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 378 | 552 | 3.5E-18 | IPR011989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1309 | 1351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1321 | 1351 | - | - |
| Coils | Coil | Coil | 1202 | 1222 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15890.1 | binding. | 0 |
| RefSeq | XP_021637140.1 | condensin-2 complex subunit D3 [Hevea brasiliensis] | 0 |
| O24610 | Condensin-2 complex subunit CAP-D3 OS=Arabidopsis thaliana OX=3702 GN=CAP-D3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2C9W8Z8 | Cnd1 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G196500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12416 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8930 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah020930, Ah039261 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg59918, Sbi_jg59919, Sbi_jg62858 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23996 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00021830 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl03434, Sgl08479, Sgl08480, Sgl08542, Sgl08543 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013149, gene:ENSEOMG00000031157 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0008980, CQ.Regalona.r1.9AG0005210 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234340 |
| Apiaceae | Apium graveolens | 1 | Ag9G01867 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G002330, COCNU_12G002430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715120 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.2128.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G14543 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024228m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g14340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1133 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1231 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17320 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0035s00031.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g31090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1299 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022658 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34000 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3698, BH05.3729, CH05.3916 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393270, gene-QOZ80_5BG0441450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0526320.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001891 |
| Poaceae | Oryza coarctata | 1 | Oco23G008030 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g36170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G090800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202781, Pt_Chr0505705, Pt_Chr0703794, Pt_Chr0703796 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G016670, Chr06G017330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G762200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG068520, gene_TRIDC5BG073880 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G480000.2, TraesCS5B02G493100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb410230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-49995, nbis-gene-49996 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25167 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.2225, evm.TU.LG16.285, evm.TU.LG17.1280 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.599 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16089 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15890 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-493 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.345 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007302 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13732 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3643 |
| Salicaceae | Populus euphratica | 3 | populus_peu08057, populus_peu19233, populus_peu22215 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604530 |
| Solanaceae | Solanum chilense | 1 | SOLCI005286600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007319 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9429 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1638 |
| Zosteraceae | Zostera marina | 2 | Zosma03g18550.v3.1, Zosma06g29710.v3.1 |