Basic Information
Locus ID:
nbisL1-mrna-3626
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 3871379 | 3877376 | - | nbisL1-mrna-3626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 104,616.53 Da | 47.06 | 83.41 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 754 | 907 | 1.9344E-57 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 314 | 906 | 2.7E-84 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 43 | 137 | 2.2E-23 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 18 | 137 | 6.8E-28 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 311 | 909 | 1.31E-110 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 11 | 151 | 2.6E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 661 | 916 | 2.9E-58 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 152 | 237 | 6.1E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 299 | 507 | 1.1E-65 | - |
| SMART | SM00695 | dusp | 38 | 140 | 6.2E-29 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 313 | 909 | 57.212528 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 19 | 137 | 19.270113 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 314 | 329 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 851 | 868 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10590.1 | ubiquitin-specific protease 10. encodes a member of the ubiquitin-specific protease family, UBP10 | 0 |
| RefSeq | XP_012086627.2 | ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas] | 0 |
| Q93Y01 | Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KY45 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology