halophFGD

Basic Information

Locus ID: nbisL1-mrna-3617

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: G-type lectin S-receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	52961600	52963975	-	nbisL1-mrna-3617

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.05	42,418.64 Da	36.76	83.38	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF11883	Domain of unknown function (DUF3403)	339	382	2.2E-8	IPR021820
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	225	349	1.47E-7	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	193	350	3.7E-12	-

Gene Ontology

Molecular Function:

GO:0004674 (protein serine/threonine kinase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G21380.1	receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.
RefSeq	XP_039060220.1	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Hibiscus syriacus]
Swiss-Prot	O81905	Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1
TrEMBL	A0A6A3C6L1	Receptor-like serine/threonine-protein kinase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00010533pilonHSYRG00246 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3617, nbisL1-mrna-8227