Basic Information
Locus ID:
nbisL1-mrna-3572
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
cationic amino acid transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 4265701 | 4267569 | + | nbisL1-mrna-3572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 68,458.13 Da | 31.50 | 104.39 | 0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13520 | Amino acid permease | 116 | 508 | 2.1E-47 | IPR002293 |
| Pfam | PF13906 | C-terminus of AA_permease | 555 | 604 | 3.7E-12 | IPR029485 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 111 | 539 | 3.5E-88 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17120.1 | cationic amino acid transporter 8. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. | 0 |
| RefSeq | XP_034933516.1 | cationic amino acid transporter 8, vacuolar [Populus alba] | 0 |
| Q9SHH0 | Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana OX=3702 GN=CAT8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JCY5 | Cationic amino acid transporter 8 vacuolar OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology